SNP Profiles of IMC 47   View Data

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 Key

 1234567891011121314
_Input profile
CCACGGACAAAGAGCCAAAGAGAAAGAC
1._MITC-000413
ACACAGACAAGGGGCCATAGGGAAAGAC
2._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
3._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
4._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
5._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
6._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
7._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
8._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
9._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
10._IMC_47
_____CTAG_AA_____
11._GC-08-103-3-02
CCACGGACTTCTAGGGAACTAGTTCTGT
12._IMC_47
_____CTAG_AA_____
13._IMC_47
_____CTAG_AA_____
14._IMC_47
_____CTAG_AA_____
15._IMC_47
_____CTAG_AA_____
16._IMC_47
_____CTAG_AA_____
17._IMC_47
_____CTAG_AA_____
18._IMC_47
_____CTAG_AA_____
19._IMC_47
_____CTAG_AA_____
20._RUQ_849B
______GG_______
21._IMC_47
_____CCAG_AA_____
22._RUQ_849
_____CCGG_AT_____
23._RUQ_849
_____CC_GG__GG___
24._IMC_47
_____CCGG_AT_____
25._IMC_47
_____CTGG_AA_____
 1516171819202122232425262728
_Input profile
AGACGGGGACAGAGAGAAAACGAACCAG
1._MITC-000413
AAAAAAAGCCGGAGGGCCAACGAGAAAG
2._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
3._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
4._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
5._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
6._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
7._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
8._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
9._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
10._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
11._GC-08-103-3-02
CTGTCC_ACAGCTCTAATTCGAAGGCT
12._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
13._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
14._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
15._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
16._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
17._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
18._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
19._IMC_47
_GTCC_AC_CT_AATTCGAAGGCT
20._RUQ_849B
_GT______CC_CG___
21._IMC_47
_GTCT_AC_TT_CCTTCGAAGTCT
22._RUQ_849
_GTTT_CC_CT_CCTTCGAGGTCT
23._RUQ_849
_GT_CT___CCCCTTCGAGTTCT
24._IMC_47
_GTTT_CC_CT_CCTTCGAGTTCT
25._IMC_47
_GTTT_CC_CT_CCTTGGAGGTCT
 2930313233343536373839404142
_Input profile
AGATGGACCGAGGGAGCGACATATAAAG
1._MITC-000413
GGATGGACCGAGGGAGCGCCATATGGGG
2._GC-08-103-3-02
_ATGGACCGAGGGCTCGGTATATAAAG
3._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
4._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
5._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
6._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
7._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
8._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
9._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
10._IMC_47
___ACCGAG_CTCG__AT__
11._GC-08-103-3-02
CTATGGACCGAGGGCTCGGTATATAAAG
12._IMC_47
CT__ACCGAG_CTCG__AT__
13._IMC_47
CT__ACCGAG_CTCG__AT__
14._IMC_47
CT__ACCGAG_CTCG__AT__
15._IMC_47
CT__ACCGAG_CTCG__AT__
16._IMC_47
CT__ACCGAG_CTCG__AT__
17._IMC_47
CT__ACCGAG_CTCG__AT__
18._IMC_47
CT__ACCGAG_CTCG__AT__
19._IMC_47
CT__ACCGAG_CTCG__AT__
20._RUQ_849B
_____AG______GG_
21._IMC_47
CT__AC_AG_CTGG__AA__
22._RUQ_849
CC__ACCGAG_CTCG__AT__
23._RUQ_849
__GGACCGAG_CT____GGGG
24._IMC_47
CC__ACCCAG_CTCG__AT__
25._IMC_47
CC__AC_AG_TTGG__TT__
 4344454647484950515253545556
_Input profile
ATAGAGGGAGAACCAGACACAGACAGCG
1._MITC-000413
ATAGAGAGAGATGGGGAAACAGCCGGCG
2._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
3._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
4._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
5._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
6._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
7._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
8._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
9._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
10._IMC_47
AT___AG____AC_GT_CG
11._GC-08-103-3-02
ATCTAGGGAGAAGG_ACACAGGTAGCG
12._IMC_47
AT___AG____AC_GT_CG
13._IMC_47
AT___AG____AC_GT_CG
14._IMC_47
AT___AG____AC_GT_CG
15._IMC_47
AT___AG____AC_GT_CG
16._IMC_47
AT___AG____AC_GT_CG
17._IMC_47
AT___AG____AC_GT_CG
18._IMC_47
AT___AG____AC_GT_CG
19._IMC_47
AT___AG____AC_GT_CG
20._RUQ_849B
_________AC___GG
21._IMC_47
AT___AG____AC_GT_CC
22._RUQ_849
AT___AG____AC_GG_GG
23._RUQ_849
AT_____CC__AC_GG_CG
24._IMC_47
AT___AG____AC_GG_GG
25._IMC_47
AA___GG____CC_GT_GG
 5758596061626364656667686970
_Input profile
ACAGGGAAAAAAACAGAGACCCAAACCG
1._MITC-000413
ACGGGGGGAAAACCAGAAAAACAAACCC
2._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
3._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
4._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
5._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
6._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
7._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
8._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
9._GC-08-103-3-02
ACCTCCTTAAAAGTAGCTGTGGTTACCG
10._IMC_47
AC__TT__GT_______
11._GC-08-103-3-02
ACCTCCTTAA_GTAGCTGTGGTTACCG
12._IMC_47
AC__TT__GT_______
13._IMC_47
AC__TT__GT_______
14._IMC_47
AC__TT__GT_______
15._IMC_47
AC__TT__GT_______
16._IMC_47
AC__TT__GT_______
17._IMC_47
AC__TT__GT_______
18._IMC_47
AC__TT__GT_______
19._IMC_47
AC__TT__GT_______
20._RUQ_849B
AC_CC___GGAG____ACCT
21._IMC_47
AC__TT__GG_______
22._RUQ_849
AC__CC__GG_______
23._RUQ_849
AC_CCCC__GGAGTT__TTAC_
24._IMC_47
AC__CC__GG_______
25._IMC_47
AA__CC__GG_______
 717273747576777879808182  
_Input profile
AAGGAGGGAGACAGCGAGATAGAGX_XX_X
1._MITC-000413
AGGGAAGGGGCCGGGGGGAAAAAAX_XX_X
2._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
3._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
4._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
5._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
6._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
7._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
8._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
9._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
10._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
11._GC-08-103-3-02
AACCCTCCAGACCTCGCTATCTAGX_XX_X
12._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
13._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
14._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
15._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
16._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
17._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
18._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
19._IMC_47
_CCCT___CTCG_ATCTAGX_XX_X
20._RUQ_849B
_CC__GG______AAX_XX_X
21._IMC_47
_CCCT___CTCG_ATCTAAX_XX_X
22._RUQ_849
_CCCT___CCGG_AATTAGX_XX_X
23._RUQ_849
_CCTT_-CC_____AAX_XX_X
24._IMC_47
_CCTT___CCGG_AATTAAX_XX_X
25._IMC_47
_CCCT___CCGG_ATTTAAX_XX_X

Input profile: IMC_47 GC-08-103-3-2

 
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

1._IMC_47 MITC-000413

69.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._IMC_47 GC-08-103-3-02

57 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._IMC_47 GC-08-103-3-02

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._IMC_47 GC-08-103-3-02

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._IMC_47 GC-08-103-3-02

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._IMC_47 GC-08-103-3-02

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

7._IMC_47 GC-08-103-3-02

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

8._IMC_47 GC-08-103-3-02

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._IMC_47 GC-08-103-3-02

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._IMC_47

55.9 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

11._IMC_47 GC-08-103-3-02

55.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

14._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

15._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

16._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

17._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

18._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

19._IMC_47

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

20._IMC_47 RUQ_849B

47.1 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._IMC_47

44.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

22._IMC_47 RUQ_849

41.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._IMC_47 RUQ_849

40.3 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._IMC_47

38.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

25._IMC_47

30.9 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998